Réalisations

2024-2021

Lecomte, L., Árnyasi, M., Ferchaud, A. L., Kent, M., Lien, S., Stenløkk, K., Sylvestre, F., Bernatchez, L. & Mérot, C. (2024). Investigating structural variant, indel and single nucleotide polymorphism differentiation between locally adapted Atlantic salmon populations. Evolutionary Applications, 17(3), e13653
Alves, V. A. & Aubin-Horth, N. (2023). Implication of the myo-inositol pathway in behavioural alterations of infected threespine sticklebacks. Functional Ecology, 37, 873–885.
Bérubé, R., Garnier, C., Lefebvre-Raine, M., Gauthier, C., Bergeron, N., Triffault-Bouchet, G., Langlois, Valérie S. & Couture, P. (2023).Early developmental toxicity of Atlantic salmon exposed to conventional and unconventional oils. Ecotoxicology and Environmental Safety, 250, 114487.

Carrier-Belleau, C., Pascal, L., Tiegs, S. D., Nozais, C., & Archambault, P. (2023). From organismal physiology to ecological processes: Effects of nutrient enrichment and salinity variation in a freshwater ecosystem. Limnology and Oceanography, 68, S115–S130.
Venney, C. J., Audet, C., Garant, D. & Bernatchez, L. (2022). Production d'omble de fontaine adaptée aux changements climatiques: évaluation de l'importance des effets épigénétiques.
Venney, C. J., Wellband, K. W., Normandeau, E., Houle, C., Garant, D., Audet, C. & Bernatchez, L. (2022). Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr (Salvelinus fontinalis). Proceedings of the Royal Society B, 289(1974), 20220670.
Audet-Gilbert, É., Sylvain, F.-E., Bouslama, S. & Derome, N. (2021). Microbiomes of Clownfish and Their Symbiotic Host Anemone Converge before Their First Physical Contact. Microbiome 9, no. 1.
Bélanger, A., Sarker, P. K., Bureau, D. P., Chouinard, Y. & Vandenberg, G. W. (2021). Apparent digestibility of macronutrients and fatty acids from microalgae (Schizochytrium sp.) fed to rainbow trout (Oncorhynchus mykiss): A potential candidate for fish oil substitution. Animals, 11(2), 456.
Berger, C. S., Laroche, J., Maaroufi, H., Martin, H., Moon, K.-M., Landry, C. R., Foster, L. J. & Aubin-Horth, N. (2021). The parasite Schistocephalus solidus secretes proteins with putative host manipulation functions. Parasites & Vectors, 14(1).
Cheaib, B., Seghouani, H., Llewellyn, M., Vandal-Lenghan, K., Mercier, P.-L. & Derome, N. (2021). The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance. Animal Microbiome, 3(201), 1-19.
Dupont-Cyr, B.-A., Le François, N. R., Christen, F., Desrosiers, V., Savoie, A., Vandenberg, G. W., Dufresne, F., & Blier, P. U. (2021). Linseed oil as a substitute for fish oil in the diet of Arctic charr (Salvelinus alpinus), brook charr (S. fontinalis) and their reciprocal hybrids. Aquaculture Reports, 22, 100949.
Lavoie, C., Wellband, K., Perreault, A., Bernatchez, L. & Derome, N. (2021). Artificial Rearing of Atlantic Salmon Juveniles for Supportive Breeding Programs Induces Long-Term Effects on Gut Microbiota after Stocking. Microorganisms. 9(9):1932.
St-Michel, E., Richard, Y. Déry, A., Cloutier, I. & membres du conseil d'administration. 2021. Rapport annuel 2021. Société saumon de la rivière Romaine. 19 p.

2020-2017

Berger C. S. & Aubin-Horth N. (2020). The secretome of a parasite alters its host’s behaviour but does not recapitulate the behavioural response to infection. Proc. R. Soc. B 287: 20200412
Cheaib, B., Seghouani, H., Ijaz, U. Z. & Derome, N. (2020). Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations. Microbiome, 8(1), 1-19.
Ndiaye, W. N., Deschamps, M.-H., Comeau, Y., Chowdhury, K., Bunod, J.-D., Letourneau-Montminy, M.-P. & Vandenberg, G. (2020). In situ chelation of phosphorus using microencapsulated aluminum and iron sulfate to bind intestinal phosphorus in preliminary studyrainbow trout (Oncorhynchus mykiss). Animal Feed Science and Technology, 269, 114675.
Ndiaye, W. N., Letourneau‐Montminy, M.-P., Lebeuf, Y., Deschamps, M.-H. & Vandenberg, G. W. (2020).Assessing body composition and dietary phosphorus retention using Dual‐energy X‐ray absorptiometry (DXA): Application on juvenile rainbow trout, Oncorhynchus mykiss (Walbaum). Aquaculture Research, 51(12), 4905–4915.
St-Michel, E., Richard, Y. Déry, A., Cloutier, I. & membres du conseil d'administration. (2020). Rapport annuel 2020. Société saumon de la rivière Romaine. 17 p.
Gauthier, J., Rouleau-Breton, S., Charette, S. J. & Derome, N. (2019). Stimulated Growth and Innate Immunity in Brook Charr (Salvelinus fontinalis) Treated with a General Probiotic (Bactocell^®) and Two Endogenous Probiotics That Inhibit Aeromonas salmonicida In Vitro. Microorganisms. 7(7):193.
Lacasse, J. & Aubin-Horth, N. (2019). Evolutionary divergence in transcription levels of neuropeptide receptors linked to both social and stress-response behaviour between two threespine stickleback populations exhibiting distinct behavioural types. Evolutionary Ecology Research, 20(3), 331-347.
Laporte, M., Le Luyer, J., Rougeux, C., Dion-Côté, A.-M., Krick, M. & Bernatchez, L. (2019). DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species. Science Advances, 5(10), eaaw1644.
Sevellec, M., Laporte, M., Bernatchez, A., Derome, N. & Bernatchez, L. (2019). Evidence for host effect on the intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids. Ecology and Evolution, 9(20), 11762–11774.
St-Michel, E., Richard, Y. Déry, A., Cloutier, I. & membres du conseil d'administration. (2019). Rapport annuel 2019. Société saumon de la rivière Romaine. 32 p.
Berger, C. S. & Aubin-Horth, N. (2018). An eDNA-qPCR assay to detect the presence of the parasite Schistocephalus solidus inside its threespine stickleback host. Journal of Experimental Biology, 221(9), jeb178137.
Dalziel, A. C., Laporte, M., Guderley, H. and Bernatchez, L. (2018). Do differences in the activities of carbohydrate metabolism enzymes between Lake Whitefish ecotypes match predictions from transcriptomic studies? Comparative Biochemistry and Physiology, Part B, 224, 138–149.
Dupont Cyr, B.-A., Dufresne, F., Christen, F., Desrosiers, V., Proulx, É., Le François, N. R., Vandenberg, G. W. & Blier, P. U. (2018). Hybridization between char species (Salvelinus alpinus and Salvelinus fontinalis): a fast track for novel allometric trajectories. Biology Open, 7(10).
Grécias, L., Valentin, J. & Aubin-Horth, N. (2018). Testing the parasite mass burden effect on alteration of host behaviour in the Schistocephalus–stickleback system. J Exp Biol 221 (6): jeb174748
St-Michel, E., Richard, Y. Déry, A., Cloutier, I. & membres du conseil d'administration. (2018). Rapport annuel 2018. Société saumon de la rivière Romaine. 20 p.
Tshinyama, A., Proulx, E., Deschamps, M. H., Okitayela, F., Khasa, D. & Vandenberg, G. W. (2018). Contribution to the identification of a local and available food source for sustainable production of Nile tilapia (Oreochromis niloticus, Linnaeus, 1758) in the Democratic Republic of Congo. Tropicultura, 36(1).
Tshinyama, A., Proulx, É., Deschamps, M. H., Okitayela, F., Khasa, D. & Vandenberg, G. W. (2018). Assessment of the inhibitory effect of different diets and plant ingredients on the digestive progress of tilapia (Oreochromis niloticus, Linnaeus, 1758). Pakistan J. Zool. Suppl. Ser., 13: 238-250.
Caron, F., St-Michel, E., Richard, Y., Gagnon-Poiré, R., Cloutier, I. & membres du conseil d'administration. (2017). Rapport annuel 2017. Société saumon de la rivière Romaine. 16 p.
Crespel, A., Dupont‐Prinet, A., Bernatchez, L., Claireaux, G., Tremblay, R. & Audet, C. (2017). Divergence in physiological factors affecting swimming performance between anadromous and resident populations of brook charr Salvelinus fontinalis. Journal of Fish Biology, 90(5), 2170-2193.
Grécias, L., Hébert F.-O., Berger C. S., Barber I. & Aubin-Horth N. (2017). Can the behaviour of threespine stickleback parasitized with Schistocephalus solidus be replicated by manipulating host physiology? J Exp Biol 220 (2): 237–246.
Páez, D. J. & Dodson, J. J. (2017). Environment-specific heritabilities and maternal effects for body size, morphology and survival in juvenile Atlantic salmon (Salmo salar): evidence from a field experiment. Environmental biology of fishes, 100, 209-221.
Seghouani, H., Garcia-Rangel, C.-E., Füller, J., Gauthier, J. & Derome, N. (2017). Walleye Autochthonous Bacteria as Promising Probiotic Candidates against Flavobacterium columnare. Frontiers in Microbiology, 8, 1349.
Sylvain, F.-E. & Derome, N. (2017). Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny. Scientific Reports, 7.

2016-2013

Caron, F., Bergeron, M., Côté, Y., Gagnon-Poiré, R., Cloutier, I. & membres du conseil d'administration. (2016). Rapport annuel 2016. Société saumon de la rivière Romaine. 12 p.
Deschamps, M.-H., Poirier Stewart, N., Demanche, A. & Vandenberg, G. W. (2016). Preliminary study for description of bone tissue responsiveness to prolonged dietary phosphorus deficiency in rainbow trout, Oncorhynchus mykiss (Walbaum). Aquaculture Research, 47(3), 900–911
Di Poi, C., Bélanger, D., Amyot, M., Rogers, S. & Aubin-Horth, N. (2016). Receptors rather than signals change in expression in four physiological regulatory networks during evolutionary divergence in threespine stickleback. Mol Ecol, 25: 3416-3427.
Di Poi, C., Lacasse, J., Rogers, S. M. & Aubin-Horth, N. (2016). Evolution of stress reactivity in stickleback. Evolutionary Ecology Research, 17(3), 395-405.

Fadhlaoui, M. & Couture, P. (2016). Combined effects of temperature and metal exposure on the fatty acid composition of cell membranes, antioxidant enzyme activities and lipid peroxidation in yellow perch (Perca flavescens). Aquatic Toxicology, 180, 45–55.

Grasset, J., Ollivier, É., Bougas, B., Yannic, G., Campbell, P. G. C., Bernatchez, L. & Couture, P. (2016). Combined effects of temperature changes and metal contamination at different levels of biological organization in yellow perch. Aquatic Toxicology, 177, 324–332.
Lacoursière-Roussel, A., Rosabal, M. & Bernatchez, L. (2016). Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions. Molecular Ecology Resources, 16(6), 1401–1414.
Laporte, M., Dalziel, A. C., Martin, N. & Bernatchez, L. (2016). Adaptation and acclimation of traits associated with swimming capacity in Lake Whitefish (coregonus clupeaformis) ecotypes. BMC Evolutionary Biology, 16(1), 160.
Boivin, B., Castonguay, M., Audet, C., Pavey, S. A., Dionne, M. & Bernatchez, L. (2015). How does salinity influence habitat selection and growth in juvenile American eels Anguilla rostrata?. Journal of Fish Biology, 86(2), 765-784.
Côté, C. L., Pavey, S. A., Stacey, J. A., Pratt, T. C., Castonguay, M., Audet, C. & Bernatchez, L. (2015). Growth, female size, and sex ratio variability in American eel of different origins in both controlled conditions and the wild: Implications for stocking programs. Transactions of the American Fisheries Society, 144(2), 246–257.
Dalziel, A. C., Martin, N., Laporte, M., Guderley, H. & Bernatchez, L. (2015). Adaptation and acclimation of aerobic exercise physiology in Lake Whitefish ecotypes (Coregonus clupeaformis). Evolution, 69(8), 2167–2186.
Dion-Cote A.-M., Bernatchez L., Symonova R. & Rab P. (2015). Reproductive isolation in a nascent species pair is associated with aneuploidy in hybrid offspring. Proceedings of the Royal Society B: Biological Sciences, 282(1802).
Gravel, V., Dorais, M., Dey, D. & Vandenberg, G. (2015). Fish effluents promote root growth and suppress fungal diseases in tomato transplants. Can. J. Plant Sci. 95: 427–436
Le Luyer J, Deschamps M.-H., Proulx E, Poirier Stewart N, Droit A, Sire, J-Y., Robert, C. & Vandenberg, G. W. (2015). RNA-Seq Transcriptome Analysis of Pronounced Biconcave Vertebrae: A Common Abnormality in Rainbow Trout (Oncorhynchus mykiss, Walbaum) Fed a Low-Phosphorus Diet. Next Generat Sequenc & Applic 1: 112.
Martin, N., Kraffe, E., Le Grand, F., Marty, Y., Bureau, D. P. & Guderley, H. (2015). Dietary fatty acid composition and the homeostatic regulation of mitochondrial phospholipid classes in red muscle of rainbow trout (Oncorhynchus mykiss). Journal of Experimental Zoology. Part A, Ecological Genetics and Physiology, 323(1), 60–71.
Société saumon de la rivière Romaine. (2015).Rapport annuel 2015. Société saumon de la rivière Romaine. 12 p.
Yossa, R., Sarker, P. K., Proulx, E. & Vandenberg, G. W. (2015). The effects of the dietary biotin on zebrafish Danio rerio reproduction. Aquaculture Research, 46(1), 117–130.
Côté, C.L., Castonguay, M., Kalujnaia, M.S., Cramb, G. & Bernatchez, L. (2014). In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species (Anguilla rostrata). BMC Genomics 15, 403
Defo, M. A., Bernatchez, L., Campbell, P. G. C. & Couture, P. (2014). Waterborne cadmium and nickel impact oxidative stress responses and retinoid metabolism in yellow perch. Aquatic Toxicology, 154, 207–220.
Deschamps, M. H., Poirier Stewart, N., Demanche, A. & Vandenberg, G. W. (2014). Preliminary study for phenotypic description of vertebral abnormalities in triploid trout subjected to prolonged deficiency in phosphorus. Journal of Applied Ichthyology, 30(4), 833-839.
Dion-Côté, A.-M., Renaut, S., Normandeau, E. & Bernatchez, L. (2014). RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species. Molecular Biology and Evolution, 31(5), 1188–1199.
Di-Poi, C., Lacasse, J., Rogers, S.M. & Aubin-Horth, N. (2014) Extensive behavioural divergence following colonisation of the freshwater environment in threespine sticklebacks. PLoS ONE 9(6): e98980.
Grasset, J., Bougas, B., Campbell, P. G. C., Bernatchez, L., Couture, P. & MacLatchey, D. (2014). Temperature, oxygen, and diet modulate gene transcription and metabolic capacities in yellow perch. Canadian Journal of Fisheries & Aquatic Sciences, 71(11).
Lacasse, J. & Aubin-Horth, N. (2014). Population-dependent conflict between individual sociability and aggressiveness. Animal Behaviour, 87, pp. 53–57.
Lamaze, F. C., Pavey, S. A., Normandeau, E., Roy, G., Garant, D. & Bernatchez, L. (2014). Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis). Molecular Ecology, 23(7), 1730–1748.
Le Luyer, J., Deschamps, M.-H., Proulx, E., Poirier Stewart, N., Robert, C. & Vandenberg, G. (2014). Responses of different body compartments to acute dietary phosphorus deficiency in juvenile triploid rainbow trout (Oncorhynchus mykiss, Walbaum). Journal of Applied Ichthyology, 30(4), 825–832.
Le Luyer, J., Deschamps, M.-H., Proulx, E., Poirier Stewart, N., Joly Beauparlant, C., Droit, A., Robert, C. & Vandenberg, G. W. (2014). Establishment of a comprehensive reference transcriptome for vertebral bone tissue to study the impacts of nutritional phosphorus deficiency in rainbow trout (Oncorhynchus mykiss, Walbaum). Marine Genomics, 18PB, 141–144.
Poirier Stewart, N., Deschamps, M.-H., Witten, P. E., Le Luyer, J., Proulx, E., Huysseune, A., Bureau, D. P. & Vandenberg, G. W. (2014). X-ray-based morphometrics: an approach to diagnose vertebral abnormalities in under-mineralized vertebrae of juvenile triploid all-female rainbow trout (Oncorhynchus mykiss) fed with a phosphorus deficient diet. Journal of Applied Ichthyology, 30(4), 796–803.
Sarker, P., Pilote, A., Auffret, M., Proulx, É., Villemur, R., Deschamps, M.-H. & Vandenberg, G. (2014). Reducing geosmin off-flavor compounds and waste outputs through dietary phosphorus management in rainbow trout aquaculture. Aquaculture Environment Interactions, 6(1), 105–117.
Société saumon de la rivière Romaine. (2014). Rapport annuel 2014. Société saumon de la rivière Romaine. 12 p.
Yossa, R., Sarker, P. K., Mock, D. M. & Vandenberg, G. W. (2014). Dietary biotin requirement for growth of juvenile zebrafish Danio rerio (Hamilton-Buchanan). Aquaculture Research, 45(11), 1787–1797.
Auffret, M., Yergeau, E., Pilote, A., Proulx, E., Proulx, D., Greer, C. W., Vandenberg, G. & Villemur, R. (2013). Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems. FEMS Microbiology Ecology, 84(2), 235–247.
Bougas, B., Audet, C. & Bernatchez, L. (2013). The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill). Heredity, 110(5), 484–491.
Bougas, B., Normandeau, E., Audet, C. & Bernatchez, L. (2013). Linking transcriptomic and genomic variation to growth in brook charr hybrids (Salvelinus fontinalis, Mitchill). Heredity, 110(5), 492–500.
Bougas, B., Normandeau, E., Pierron F., Campbell P.G., Bernatchez, L. & Couture, P. (2013) How does exposure to nickel and cadmium affect the transcriptome of yellow perch (Perca flavescens)–results from a 1000 candidate-gene microarray. Aquat. Toxicol., 142: 355-364
Boutin, S., Audet, C. & Derome, N. (2013). Probiotic treatment by indigenous bacteria decreases mortality without disturbing the natural microbiota of Salvelinus fontinalis. Canadian Journal of Microbiology, 59(10), pp. 662–670.
Boutin, S., Bernatchez, L., Audet, C. & Derome, N. (2013). Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota. PLOS ONE 8(12): e84772.
Crespel, A., Bernatchez, L., Audet, C. & Garant, D. (2013). Strain specific genotype− environment interactions and evolutionary potential for body mass in Brook Charr (Salvelinus fontinalis). G3: Genes, Genomes, Genetics, 3(3), 379-386.
Crespel, A., Bernatchez, L., Garant, D. & Audet, C. (2013). Genetically based population divergence in overwintering energy mobilization in brook charr (Salvelinus fontinalis). Genetica, 141, 51-64.
Filteau, M., Pavey, S. A., St-Cyr, J. & Bernatchez, L. (2013). Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish. Molecular Biology and Evolution, 30(6), 1384–1396.
Martin, N., Bureau, D. P., Marty, Y., Kraffe, E. & Guderley, H. (2013). Dietary lipid quality and mitochondrial membrane composition in trout: responses of membrane enzymes and oxidative capacities. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 183(3), 393–408.
Ouellet, V., Pierron, F., Mingelbier, M., Fournier, M., Fournier, M. & Couture, P. (2013). Thermal Stress Effects on Gene Expression and Phagocytosis in the Common Carp (Cyprinus Carpio): a Better Understanding of the Summer 2001 st. Lawrence River Fish Kill. The Open Fish Science Journal, 6(1), 99–106.
Société saumon de la rivière Romaine. (2013). Rapport annuel 2013. Société saumon de la rivière Romaine. 12 p.
Yossa, R., Sarker, P. K., Proulx, E., Saxena, V., Ekker, M. & Vandenberg, G. W. (2013). A Practical Approach for Sexing Zebrafish, Danio rerio. Journal of Applied Aquaculture, 25(2), 148–153.

2012-2009

Aubin-Horth, N., Deschênes, M. & Cloutier, S. (2012). Natural variation in the molecular stress network correlates with a behavioural syndrome. Hormones and behavior, 61(1), 140-146.
Boutin, S., Bernatchez, L., Audet, C. & Derome, N. (2012). Antagonistic effect of indigenous skin bacteria of brook charr (Salvelinus fontinalis) against Flavobacterium columnare and F. psychrophilum. Veterinary Microbiology, 155(2-4), 355–361.
Crespel, A., Audet, C., Bernatchez, L. & Garant, D. (2012). Effects of Rearing Environment and Strain Combination on Heterosis in Brook Trout. North American Journal of Aquaculture, 74(2), 188–198.
Lacasse, J. & Aubin-Horth, N. (2012). A test of the coupling of predator defense morphology and behavior variation in two threespine stickleback populations. Current Zoology, 58(1), pp. 53–65.
Sarker, P. K., Yossa, R., Karanth, S., Ekker, M. & Vandenberg, G. W. (2012). Influences of dietary biotin and avidin on growth, survival, deficiency syndrome and hepatic gene expression of juvenile Nile tilapia Oreochromis niloticus. Fish Physiology and Biochemistry, 38(4), 1183–1193.
Société saumon de la rivière Romaine. (2012). Rapport annuel 2012. Société saumon de la rivière Romaine. 12 p.
Sauvage, C., Vagner, M., Derome, N., Audet, C. & Bernatchez, L. (2012). Coding Gene SNP Mapping Reveals QTL Linked to Growth and Stress Response in Brook Charr (Salvelinus fontinalis). G3: Genes|Genomes|Genetics, 2(6), 707–720.
Auffret, M., Pilote, A., Proulx, E., Proulx, D., Vandenberg, G. W. & Villemur, R. (2011). Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems Water Research, vol. 45, nº 20. pp. 6753-6762
Crespel, A., Bernatchez, L., Garant, D. & Audet, C. (2011). Quantitative genetic analysis of the physiological stress response in three strains of brook charr Salvelinus fontinalis and their hybrids. Journal of Fish Biology, 79(7), 2019-2033.
Granier, S., Audet, C. & Bernatchez, L. (2011). Heterosis and outbreeding depression between strains of young-of-the-year brook trout (Salvelinus fontinalis). Canadian Journal of Zoology, 89(3), 190–198.
Jeukens, J., Boyle, B., Kukavica-Ibrulj, I., St-Cyr, J., Lévesque, R. C. & Bernatchez, L. (2011). BAC library construction, screening and clone sequencing of lake whitefish (Coregonus clupeaformis, Salmonidae) towards the elucidation of adaptive species divergence. Molecular Ecology Resources, 11(3), 541–549.
McCairns, R. S., Bourget, S., & Bernatchez, L. (2011). Putative causes and consequences of MHC variation within and between locally adapted stickleback demes. Molecular ecology, 20(3), 486-502.
Paez, D. J., Bernatchez, L. & Dodson, J. J. (2011). Alternative life histories in the Atlantic salmon: genetic covariances within the sneaker sexual tactic in males. Proceedings of the Royal Society B: Biological Sciences, 278(1715), 2150-2158.
Páez, D. J., Brisson‐Bonenfant, C., Rossignol, O., Guderley, H. E., Bernatchez, L. & Dodson, J. J. (2011). Alternative developmental pathways and the propensity to migrate: a case study in the Atlantic salmon. Journal of Evolutionary Biology, 24(2), 245-255.
Renaut, S. & Bernatchez, L. (2011). Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae). Heredity, 106(6), 1003–1011.
Rossignol, O., Dodson, J. J. & Guderley, H. (2011). Relationship between metabolism, sex and reproductive tactics in young Atlantic salmon (Salmo salar L.). Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology, 159(1), 82–91.
Sarker, P. K., Fournier, J., Boucher, E., Proulx, E., de la Noüe, J. & Vandenberg, G. W. (2011). Effects of low phosphorus ingredient combinations on weight gain, apparent digestibility coefficients, non-fecal phosphorus excretion, phosphorus retention and loading of large rainbow trout (Oncorhynchus mykiss). Animal Feed Science and Technology, 168(3), 241–249.
Vandenberg, G. W., Scott, S. L., Sarker, P. K., Dallaire, V. & de la Noüe, J. (2011). Encapsulation of microbial phytase: Effects on phosphorus bioavailability in rainbow trout (Oncorhynchus mykiss). Animal Feed Science & Technology, 169(3/4).
Yossa, R., Sarker, P. K., Karanth, S., Ekker, M. & Vandenberg, G. W. (2011). Effects of dietary biotin and avidin on growth, survival, feed conversion, biotin status and gene expression of zebrafish Danio rerio. Comparative Biochemistry & Physiology Part B, 160(4), 150-158.
Yossa, R., Sarker, P. K. & Vandenberg, G. W. (2011). Preliminary evidence of the contribution of the intestinal microflora to biotin supply in zebrafish Danio rerio (Hamilton-Buchanan). Zebrafish, 8(4), 221–227
Bougas, B., Granier, S., Audet, C. & Bernatchez, L. (2010). The transcriptional landscape of cross-specific hybrids and its possible link with growth in brook charr (Salvelinus fontinalis Mitchill). Genetics, 186(1), 97–107.
Croisetière, S., Bernatchez, L. & Belhumeur, P. (2010). Temperature and length-dependent modulation of the MH class IIβ gene expression in brook charr (Salvelinus fontinalis) by a cis-acting minisatellite. Molecular Immunology, 47(9), 1817-1829.
Koko, G. K.D., Sarker, P. K., Proulx, E. & Vandenberg, G. W. (2010). Effects of alternating feeding regimes with varying dietary phosphorus levels on growth, mineralization, phosphorus retention and loading of large rainbow trout (Oncorhynchus mykiss). Aquatic Living Resources, 23(3), 277–284.
Lake, J., Gravel, C., Koko, G. K. D., Robert, C. & Vandenberg, G. W. (2010). Combining suppressive subtractive hybridization and cDNA microarrays to identify dietary phosphorus-responsive genes of the rainbow trout (Oncorhynchus mykiss) kidney. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 5(1), 24–35.
McCairns, R. S. & Bernatchez, L. (2010). Adaptive divergence between freshwater and marine sticklebacks: insights into the role of phenotypic plasticity from an integrated analysis of candidate gene expression. Evolution, 64(4), 1029-1047.
Páez, D. J., Morrissey, M., Bernatchez, L. & Dodson, J. J. (2010). The genetic basis of early‐life morphological traits and their relation to alternative male reproductive tactics in Atlantic salmon. Journal of Evolutionary Biology, 23(4), 757-768.
Rossignol, O., Dodson, J. J., Marquilly, C. & Guderley, H. (2010). Do local adaptation and the reproductive tactic of Atlantic salmon (Salmo salar L.) affect offspring metabolic capacities? Physiological and Biochemical Zoology : PBZ, 83(3), 424–434.
Bernatchez, L., Renaut, S. & Nolte, A. (2009). Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation. BMC Evolutionary Biology, 9(1), 1–12.
Blanchet, S., Bernatchez, L. & Dodson, J. J. (2009). Does interspecific competition influence relationships between heterozygosity and fitness-related behaviors in juvenile Atlantic salmon (Salmo salar)?. Behavioral ecology and sociobiology, 63, 605-615.
Côté, C. L., Castonguay, M., Verreault, G. & Bernatchez, L. (2009). Differential effects of origin and salinity rearing conditions on growth of glass eels of the American eel Anguilla rostrata: implications for stocking programmes. Journal of Fish Biology, 74(9), 1934–1948.
Jeukens, J., Bittner, D., Knudsen, R. & Bernatchez, L. (2009). Candidate genes and adaptive radiation: insights from transcriptional adaptation to the limnetic niche among coregonine fishes (Coregonus spp., Salmonidae). Mol Biol Evol. 26(1):155-66.
Martin, N., Kraffe, E. & Guderley, H. (2009). Effect of day length on oxidative capacities of mitochondria from red muscle of rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology, 152(4), 599–603.
Renaut, S., Nolte, A. W. & Bernatchez, L. (2009). Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae). Molecular Biology and Evolution, 26(4), 925–936.
Restrepo J.D., Labelle M., Comeau Y., Parent S., Villemur R. & Juteau P. (2009). Biological phosphorus removal and Denitrification of a fish farm effluent in a sequencing moving bed biofilm reactor. Water Quality Research Journal of Canada, 44(3), 233–242.
Whiteley, A. R., Persaud, K. N., Derome, N., Montgomerie, R. & Bernatchez, L. (2009). Reduced sperm performance in backcross hybrids between species pairs of whitefish (Coregonus clupeaformis). Canadian Journal of Zoology, 87(7), 566–572.

2008 - 2004

Blanchet, S., Páez, D. J., Bernatchez, L. & Dodson, J. J. (2008). An integrated comparison of captive-bred and wild Atlantic salmon (Salmo salar): implications for supportive breeding programs. Biological conservation, 141(8), 1989-1999.
Croisetiere, S., Tarte, P. D., Bernatchez, L. & Belhumeur, P. (2008). Identification of MHC class IIβ resistance/susceptibility alleles to Aeromonas salmonicida in brook charr (Salvelinus fontinalis). Molecular Immunology, 45(11), 3107-3116.
Derome, N., Bougas, B., Rogers, S. M., Whiteley, A. R., Labbe, A., Laroche, J. & Bernatchez, L. (2008). Pervasive sex-linked effects on transcription regulation as revealed by expression quantitative trait loci mapping in lake whitefish species pairs (Coregonus sp., Salmonidae). Genetics, 179(4), 1903–1917.
Roberge, C., Blanchet, S., Dodson, J. J., Guderley, H., Bernatchez, L. & Ellegren, H. (2008). Disturbance of social hierarchy by an invasive species: A gene transcription study. PLoS ONE, 3(6): e2408.
St-Cyr, J., Derome, N. & Bernatchez, L. (2008). The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.). Molecular Ecology, 17(7), 1850–1870.
Whiteley, A. R., Derome, N., Rogers, S. M., St-Cyr, J., Laroche, J., Labbe, A., Nolte, A., Renaut, S., Jeukens, J. & Bernatchez, L. (2008). The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.). Genetics, 180(1), 147–164.
Blanchet, S., Bernatchez, L. & Dodson, J. J. (2007). Behavioural and growth responses of a territorial fish (Atlantic salmon, Salmo salar, L.) to multiple predatory cues. Ethology, 113(11), 1061-1072.
Blanchet, S., Loot, G., Bernatchez, L. & Dodson, J. J. (2007). The disruption of dominance hierarchies by a non-native species: an individual-based analysis. Oecologia, 152, 569-581.
Côté, G., Perry, G., Blier, P. & Bernatchez, L. (2007). The influence of gene-environment interactions on GHR and IGF-1 expression and their association with growth in brook charr, Salvelinus fontinalis (Mitchill). BMC genetics, 8, 1-13.
Dallaire, V., Lessard, P., Vandenberg, G. & de la Noüe, J. (2007). Effect of algal incorporation on growth, survival and carcass composition of rainbow trout (Oncorhynchus mykiss) fry. Bioresource Technology, 98(7), 1433–1439.
Roberge, C., Páez, D. J., Rossignol, O., Guderley, H., Dodson, J. & Bernatchez, L. (2007). Genome-wide survey of the gene expression response to saprolegniasis in Atlantic salmon. Molecular immunology, 44(6), 1374-1383.
Rogers, S. M. & Bernatchez, L. (2007). The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp. Salmonidae) species pairs. Molecular Biology and Evolution, 24(6), 1423–1438.
Rogers, S. M. & Bernatchez, L. (2005). FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis). Molecular ecology, 14(2), 351-361.
Perry, G. M., Tarte, P., Croisetiere, S., Belhumeur, P. & Bernatchez, L. (2004). Genetic variance and covariance for 0+ brook charr (Salvelinus fontinalis) weight and survival time of furunculosis (Aeromonas salmonicida) exposure. Aquaculture, 235(1-4), 263-271.

N.B. Cette liste comporte les articles publiés à la suite de protocoles de recherche réalisés dans les installations du LARSEM (autrefois appelé LARSA). Il est fort possible que des articles nous aient échappé au fils des ans. Pour toute demande d'ajout, merci de nous contacter au larsem@bio.ulaval.ca et il nous fera grand plaisir de les ajouter.